Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00051.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 861

Length: 1436
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31


Found at i:775 original size:51 final size:51

Alignment explanation


    Indices: 699--800  Score: 195
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        689 GTAAAAAAGA

                                                   *           
        699 AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTGATAATTTGATC
          1 AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTAATAATTTGATC

                                                               
        750 AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTAATAATTTGATC
          1 AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTAATAATTTGATC

        801 TTCATATTCA


Statistics
Matches: 50,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  51   50  1.00

ACGTcount: A:0.30, C:0.08, G:0.26, T:0.35


Consensus pattern (51 bp):   
AGGTAGAATATTGAGTTGCTGCTGCATGAGATATGTAGTAATAATTTGATC
Done.