Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00054.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 785

Length: 1309
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25


Found at i:171 original size:3 final size:3

Alignment explanation


    Indices: 156--200  Score: 81
    Period size: 3  Copynumber: 15.0  Consensus size: 3

        146 TAGTTACTAA

                      *                                                
        156 CAT CAT CAA CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT

        201 AGGCCATGAA


Statistics
Matches: 40,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   40  1.00

ACGTcount: A:0.36, C:0.33, G:0.00, T:0.31


Consensus pattern (3 bp):   
CAT

Done.