Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00066.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2500
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26


Found at i:307 original size:51 final size:48

Alignment explanation


    Indices: 207--321  Score: 203
    Period size: 48  Copynumber: 2.4  Consensus size: 48

        197 GCCATCCACC

                               *                            
        207 GCAACTCCGCCGCCAACTACCACTCCTTCCACACCACCACCAACCGCA
          1 GCAACTCCGCCGCCAACTAACACTCCTTCCACACCACCACCAACCGCA

                                         *                  
        255 GCAACTCCGCCGCCAACTAACACTCCTTCTACACCACCACCAACCGCA
          1 GCAACTCCGCCGCCAACTAACACTCCTTCCACACCACCACCAACCGCA

               *               
        303 GCAGCTCCGCCGCCAACTA
          1 GCAACTCCGCCGCCAACTA

        322 GTCCTCCCTC


Statistics
Matches: 64,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  48   64  1.00

ACGTcount: A:0.27, C:0.51, G:0.10, T:0.11


Consensus pattern (48 bp):   
GCAACTCCGCCGCCAACTAACACTCCTTCCACACCACCACCAACCGCA
Done.