Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01484.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 525

Length: 875
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34


Found at i:50 original size:7 final size:7

Alignment explanation


    Indices: 38--62  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

         28 ACTTCCCCCT

                   
         38 TTCTTCC
          1 TTCTTCC

                   
         45 TTCTTCC
          1 TTCTTCC

                   
         52 TTCTTCC
          1 TTCTTCC

                
         59 TTCT
          1 TTCT

         63 CCCCCCTTCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60


Consensus pattern (7 bp):   
TTCTTCC
Done.