Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00068.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 999

Length: 1665
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30


Found at i:1554 original size:7 final size:7

Alignment explanation


    Indices: 1539--1577  Score: 51
    Period size: 7  Copynumber: 5.6  Consensus size: 7

       1529 ATATGAACAC

                   
       1539 TTCGAGT
          1 TTCGAGT

                *  
       1546 TTCGGGT
          1 TTCGAGT

                *  
       1553 TTCGGGT
          1 TTCGAGT

               *   
       1560 TTCAAGT
          1 TTCGAGT

                   
       1567 TTCGAGT
          1 TTCGAGT

                
       1574 TTCG
          1 TTCG

       1578 GATATAACTG


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.10, C:0.15, G:0.31, T:0.44


Consensus pattern (7 bp):   
TTCGAGT

Done.