Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00071.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2292
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26


Found at i:807 original size:69 final size:69

Alignment explanation


    Indices: 730--937  Score: 362
    Period size: 69  Copynumber: 3.0  Consensus size: 69

        720 TCCCACAGCC

                                                                             
        730 ACAGGACCGACTTAAAAAATACGGGTCTTTCCATGTCAATGGTGATGATAATAAATCAAATGATG
          1 ACAGGACCGACTTAAAAAATACGGGTCTTTCCATGTCAATGGTGATGATAATAAATCAAATGATG

                
        795 GAAA
         66 GAAA

                              *                                              
        799 ACAGGACCGACTTAAAAAGTACGGGTCTTTCCATGTCAATGGTGATGATAATAAATCAAATGATG
          1 ACAGGACCGACTTAAAAAATACGGGTCTTTCCATGTCAATGGTGATGATAATAAATCAAATGATG

                
        864 GAAA
         66 GAAA

                       *             *                     *            **   
        868 ACAGGACCGACCTAAAAAATACGGGCCTTTCCATGTCAATGGTGATGCTAATAAATCAAACAATG
          1 ACAGGACCGACTTAAAAAATACGGGTCTTTCCATGTCAATGGTGATGATAATAAATCAAATGATG

                
        933 GAAA
         66 GAAA

             
        937 A
          1 A

        938 AGTGCTGATC


Statistics
Matches: 132,  Mismatches: 7, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  69  132  1.00

ACGTcount: A:0.40, C:0.16, G:0.20, T:0.23


Consensus pattern (69 bp):   
ACAGGACCGACTTAAAAAATACGGGTCTTTCCATGTCAATGGTGATGATAATAAATCAAATGATG
GAAA
Done.