Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00090.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35


Found at i:257 original size:45 final size:45

Alignment explanation


    Indices: 188--292  Score: 176
    Period size: 45  Copynumber: 2.4  Consensus size: 45

        178 TTTCTTTTTC

                *                                        
        188 ATTTCCAGCTACACTCACTTTCCGTCTCCAATATTACGCCCAGGA
          1 ATTTTCAGCTACACTCACTTTCCGTCTCCAATATTACGCCCAGGA

                                                   *     
        233 ATTTTCAGCTACACTCACTTTCCGTCTCCAATATTACGCTCAGGA
          1 ATTTTCAGCTACACTCACTTTCCGTCTCCAATATTACGCCCAGGA

               *            
        278 ATTGTCAG-TACACTC
          1 ATTTTCAGCTACACTC

        293 TCTATGGAGG


Statistics
Matches: 57,  Mismatches: 3, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  44    7  0.12
  45   50  0.88

ACGTcount: A:0.25, C:0.32, G:0.11, T:0.31


Consensus pattern (45 bp):   
ATTTTCAGCTACACTCACTTTCCGTCTCCAATATTACGCCCAGGA
Done.