Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00090.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1734
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:144 original size:45 final size:45

Alignment explanation


    Indices: 87--184  Score: 171
    Period size: 45  Copynumber: 2.2  Consensus size: 45

         77 TCTGTATTTT

                                                     *   
         87 GCTACACTCACTTTCCGTCTCCAATATTACGCCCAGGAATTTTCA
          1 GCTACACTCACTTTCCGTCTCCAATATTACGCCCAGGAATTGTCA

                                            *            
        132 GCTACACTCACTTTCCGTCTCCAATATTACGCTCAGGAATTGTCA
          1 GCTACACTCACTTTCCGTCTCCAATATTACGCCCAGGAATTGTCA

                     
        177 G-TACACTC
          1 GCTACACTC

        185 TCTATGGAGG


Statistics
Matches: 51,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  44    7  0.14
  45   44  0.86

ACGTcount: A:0.24, C:0.33, G:0.12, T:0.31


Consensus pattern (45 bp):   
GCTACACTCACTTTCCGTCTCCAATATTACGCCCAGGAATTGTCA
Done.