Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00099.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1701
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27


Found at i:1673 original size:42 final size:42

Alignment explanation


    Indices: 1614--1697  Score: 168
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1604 ATGAAACAAG

                                                      
       1614 GTAAATTGAAAAATTTCCCATATGAATTCAAATCTCAGTGTT
          1 GTAAATTGAAAAATTTCCCATATGAATTCAAATCTCAGTGTT

                                                      
       1656 GTAAATTGAAAAATTTCCCATATGAATTCAAATCTCAGTGTT
          1 GTAAATTGAAAAATTTCCCATATGAATTCAAATCTCAGTGTT

       1698 ATCT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   42  1.00

ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36


Consensus pattern (42 bp):   
GTAAATTGAAAAATTTCCCATATGAATTCAAATCTCAGTGTT
Done.