Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00100.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1702
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:638 original size:17 final size:17

Alignment explanation


    Indices: 616--649  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        606 TCTAAAGGGT

                             
        616 TCACGAGAAAAAGTGTC
          1 TCACGAGAAAAAGTGTC

                             
        633 TCACGAGAAAAAGTGTC
          1 TCACGAGAAAAAGTGTC

        650 ACAGTTTTGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18


Consensus pattern (17 bp):   
TCACGAGAAAAAGTGTC
Done.