Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01490.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1245
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:1110 original size:30 final size:30

Alignment explanation


    Indices: 1074--1133  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1064 TCACCAGCAA

                                          
       1074 ACAATGGTGCACAAATTTGTTTAATTTATT
          1 ACAATGGTGCACAAATTTGTTTAATTTATT

                                          
       1104 ACAATGGTGCACAAATTTGTTTAATTTATT
          1 ACAATGGTGCACAAATTTGTTTAATTTATT

       1134 CTTATTTTTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43


Consensus pattern (30 bp):   
ACAATGGTGCACAAATTTGTTTAATTTATT
Done.