Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00139.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1096
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24


Found at i:39 original size:15 final size:16

Alignment explanation


    Indices: 10--52  Score: 52
    Period size: 16  Copynumber: 2.8  Consensus size: 16

          1 ATAGAAAAG

                *     *     
         10 AAAAGAAAAACTAA-T
          1 AAAAAAAAAAATAATT

              *             
         25 AACAAAAAAAATAATT
          1 AAAAAAAAAAATAATT

                        
         41 AAAAAAAAAAAT
          1 AAAAAAAAAAAT

         53 CCTTTGCTGC


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  15   11  0.48
  16   12  0.52

ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14


Consensus pattern (16 bp):   
AAAAAAAAAAATAATT

Done.