Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00140.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1989
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35


Found at i:228 original size:2 final size:2

Alignment explanation


    Indices: 221--245  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

        211 TTTCTCTGTT

                                                 
        221 TG TG TG TG TG TG TG TG TG TG TG TG T
          1 TG TG TG TG TG TG TG TG TG TG TG TG T

        246 TTTGAATGGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52


Consensus pattern (2 bp):   
TG

Found at i:1769 original size:21 final size:21

Alignment explanation


    Indices: 1743--1784  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1733 ATGAATCGCA

                          *      
       1743 AAGGATCAGCAGATTAAAAAC
          1 AAGGATCAGCAGATCAAAAAC

                                 
       1764 AAGGATCAGCAGATCAAAAAC
          1 AAGGATCAGCAGATCAAAAAC

       1785 TTACTTAAAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.52, C:0.17, G:0.19, T:0.12


Consensus pattern (21 bp):   
AAGGATCAGCAGATCAAAAAC
Done.