Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00141.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2240
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:157 original size:15 final size:15

Alignment explanation


    Indices: 137--167  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        127 TTCGTAGCTA

                           
        137 CTTTTCCTTCTTCTT
          1 CTTTTCCTTCTTCTT

                  *        
        152 CTTTTCTTTCTTCTT
          1 CTTTTCCTTCTTCTT

             
        167 C
          1 C

        168 GCATTTAGAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (15 bp):   
CTTTTCCTTCTTCTT
Done.