Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01496.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34


Found at i:154 original size:68 final size:69

Alignment explanation


    Indices: 44--202  Score: 230
    Period size: 68  Copynumber: 2.3  Consensus size: 69

         34 TCAACTTTAC

                             *                                               
         44 CCTTCTCCCTCTTTTTCGTTCTCACGTCTGAAGCAACTTCTTTTTTTCA-TTCTTCCCATTTCCT
          1 CCTTCT-CCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCT

                 
        108 TCCAA
         65 TCCAA

                               *           *  *                              
        113 CCTTCTCCTCTTTTTCATTGTCACGTCTGAATCATCTTCTTTTTTTCATTCTTCTTCCCATTTCC
          1 CCTTCTCCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCA-T-TTCTTCCCATTTCC

                  
        178 TTCCAA
         64 TTCCAA

              *                
        184 CCATCTCTCTCTTTTTCAT
          1 CCTTCTC-CTCTTTTTCAT

        203 GCTTCTATCC


Statistics
Matches: 81,  Mismatches: 5, Indels: 5
        0.89            0.05        0.05

Matches are distributed among these distances:
  68   38  0.47
  69    6  0.07
  71   26  0.32
  72   11  0.14

ACGTcount: A:0.13, C:0.34, G:0.04, T:0.49


Consensus pattern (69 bp):   
CCTTCTCCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCTT
CCAA
Done.