Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00173.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 539

Length: 899
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:578 original size:93 final size:93

Alignment explanation


    Indices: 419--608  Score: 326
    Period size: 93  Copynumber: 2.0  Consensus size: 93

        409 AGCCGCCGCA

                       *                 *                                   
        419 GCGAGGTTCGCGAACTCGGAGCCTTCGACTATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
          1 GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT

               *                        
        484 GGAGTCACCGTCGCCGTCAGTTTCGGAC
         66 GGAATCACCGTCGCCGTCAGTTTCGGAC

                    *       *                                                
        512 GCGAGGTTTGCAAACTTGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
          1 GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT

                                     *  
        577 GGAATCACCGTCGCCGTCAGTTTCGTAC
         66 GGAATCACCGTCGCCGTCAGTTTCGGAC

                
        605 GCGA
          1 GCGA

        609 CGGTACAATT


Statistics
Matches: 91,  Mismatches: 6, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  93   91  1.00

ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24


Consensus pattern (93 bp):   
GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
GGAATCACCGTCGCCGTCAGTTTCGGAC
Done.