Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00221.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2907
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36


Found at i:628 original size:26 final size:26

Alignment explanation


    Indices: 569--622  Score: 99
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        559 ATATTGCATT

                                  *   
        569 TTGCTACTCTATTAAAAAATAGTAAA
          1 TTGCTACTCTATTAAAAAATAGCAAA

                                      
        595 TTGCTACTCTATTAAAAAATAGCAAA
          1 TTGCTACTCTATTAAAAAATAGCAAA

              
        621 TT
          1 TT

        623 AGTACTTGTC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.44, C:0.13, G:0.07, T:0.35


Consensus pattern (26 bp):   
TTGCTACTCTATTAAAAAATAGCAAA

Found at i:1014 original size:21 final size:21

Alignment explanation


    Indices: 988--1029  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        978 CCATGTAGGT

                                 
        988 CCTGTACAAGAAGTCAAATTG
          1 CCTGTACAAGAAGTCAAATTG

                                 
       1009 CCTGTACAAGAAGTCAAATTG
          1 CCTGTACAAGAAGTCAAATTG

       1030 TATTTTGCCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24


Consensus pattern (21 bp):   
CCTGTACAAGAAGTCAAATTG
Done.