Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00226.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.35


Found at i:1249 original size:27 final size:27

Alignment explanation


    Indices: 1211--1264  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1201 AATTCAATAA

                                       
       1211 TTGAAAACTATATATAACTAGTATTAT
          1 TTGAAAACTATATATAACTAGTATTAT

                                       
       1238 TTGAAAACTATATATAACTAGTATTAT
          1 TTGAAAACTATATATAACTAGTATTAT

       1265 GCTCAACAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41


Consensus pattern (27 bp):   
TTGAAAACTATATATAACTAGTATTAT
Done.