Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00234.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3734
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:1590 original size:15 final size:16

Alignment explanation


    Indices: 1558--1590  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1548 TGCTGCTGTT

                    *       
       1558 AGTTGCCATTCAAATG
          1 AGTTGCCAATCAAATG

                            
       1574 AGTTGCCAATC-AATG
          1 AGTTGCCAATCAAATG

              
       1589 AG
          1 AG

       1591 CTGTGTCTTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15    6  0.38
  16   10  0.62

ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27


Consensus pattern (16 bp):   
AGTTGCCAATCAAATG

Found at i:3545 original size:13 final size:13

Alignment explanation


    Indices: 3529--3558  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       3519 CAAAAAGAAC

                         
       3529 AAAAAAAAAAAGG
          1 AAAAAAAAAAAGG

                  *      
       3542 AAAAAAGAAAAGG
          1 AAAAAAAAAAAGG

                
       3555 AAAA
          1 AAAA

       3559 TAATTACTTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAAAAGG
Done.