Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00254.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3472
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37


Found at i:2071 original size:25 final size:23

Alignment explanation


    Indices: 2013--2075  Score: 65
    Period size: 25  Copynumber: 2.6  Consensus size: 23

       2003 TTTTACTCAT

                   *               
       2013 TATTTTTCATAAATATAAATAAA
          1 TATTTTTTATAAATATAAATAAA

                                        
       2036 T-TCGTTGTTTATAAATATAGATATAAA
          1 TAT--TT-TTTATAAATATA-A-ATAAA

                         
       2063 TATTTTTTATAAA
          1 TATTTTTTATAAA

       2076 GGAAAATTAA


Statistics
Matches: 33,  Mismatches: 1, Indels: 10
        0.75            0.02        0.23

Matches are distributed among these distances:
  22    1  0.03
  23    1  0.03
  24    2  0.06
  25   19  0.58
  26    3  0.09
  27    6  0.18
  28    1  0.03

ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48


Consensus pattern (23 bp):   
TATTTTTTATAAATATAAATAAA
Done.