Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00285.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3738
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:3071 original size:111 final size:111

Alignment explanation


    Indices: 2850--3064  Score: 403
    Period size: 111  Copynumber: 1.9  Consensus size: 111

       2840 TAATTGTCAG

                                                                           * 
       2850 CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAATT
          1 CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAACT

                 *                                        
       2915 TGGCTGATAATGCTGGGAATGGTGCTGCTATTGAAAATTACAATAT
         66 TGGCTAATAATGCTGGGAATGGTGCTGCTATTGAAAATTACAATAT

                                                                             
       2961 CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAACT
          1 CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAACT

                        *                          
       3026 TGGCTAATAATGTTGGGAATGGTGCTGCTATTGAAAATT
         66 TGGCTAATAATGCTGGGAATGGTGCTGCTATTGAAAATT

       3065 GTAATATTTG


Statistics
Matches: 101,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 111  101  1.00

ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27


Consensus pattern (111 bp):   
CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAACT
TGGCTAATAATGCTGGGAATGGTGCTGCTATTGAAAATTACAATAT
Done.