Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00285.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3942
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29


Found at i:3273 original size:111 final size:111

Alignment explanation


    Indices: 3079--3302  Score: 403
    Period size: 111  Copynumber: 2.0  Consensus size: 111

       3069 TAATTGTCAG

                                                                           * 
       3079 CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAATT
          1 CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAACT

                 *                                        
       3144 TGGCTGATAATGCTGGGAATGGTGCTGCTATTGAAAATTACAATAT
         66 TGGCTAATAATGCTGGGAATGGTGCTGCTATTGAAAATTACAATAT

                                                                             
       3190 CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAACT
          1 CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAACT

                        *                          **     
       3255 TGGCTAATAATGTTGGGAATGGTGCTGCTATTGAAAATTGTAATAT
         66 TGGCTAATAATGCTGGGAATGGTGCTGCTATTGAAAATTACAATAT

              
       3301 CT
          1 CT

       3303 TCAGTGAAAC


Statistics
Matches: 108,  Mismatches: 5, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 111  108  1.00

ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28


Consensus pattern (111 bp):   
CTCTCCTACTCCGCAGATAAAGAACAGTGAAAGCCAGTCAATTTCATCAGCAACCTTGGAGAACT
TGGCTAATAATGCTGGGAATGGTGCTGCTATTGAAAATTACAATAT
Done.