Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00299.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2265
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34


Found at i:547 original size:94 final size:94

Alignment explanation


    Indices: 386--569  Score: 287
    Period size: 94  Copynumber: 2.0  Consensus size: 94

        376 TTAGCCTGAG

                                     *                     *          *      
        386 TGCTTCCTCTTTCATTGCCTCTGCGTGCTTCCCTTTTTGTTTTTGAAGTTCTAGAGCTGGCAATA
          1 TGCTTCCTCTTTCATTGCCTCTGCGCGCTTCCCTTTTTGTTTTTGAAATTCTAGAGCTCGCAATA

                        *                
        451 CCATTCTTGCAGTAGGTACCTTTTTCTCA
         66 CCATTCTTGCAGCAGGTACCTTTTTCTCA

                                   *                                *   **   
        480 TGCTTCCTCTTTCATTGCCTCTGTGCGCTTCCCTTTTTGTTTTTGAAATTCTAGAGTTCGTGATA
          1 TGCTTCCTCTTTCATTGCCTCTGCGCGCTTCCCTTTTTGTTTTTGAAATTCTAGAGCTCGCAATA

                               *     
        545 CCATTCTTGCAGCAGGTACTTTTTT
         66 CCATTCTTGCAGCAGGTACCTTTTT

        570 TTCTCAATTA


Statistics
Matches: 81,  Mismatches: 9, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  94   81  1.00

ACGTcount: A:0.14, C:0.24, G:0.17, T:0.45


Consensus pattern (94 bp):   
TGCTTCCTCTTTCATTGCCTCTGCGCGCTTCCCTTTTTGTTTTTGAAATTCTAGAGCTCGCAATA
CCATTCTTGCAGCAGGTACCTTTTTCTCA
Done.