Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00313.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 557

Length: 929
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33


Found at i:216 original size:36 final size:36

Alignment explanation


    Indices: 175--247  Score: 146
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        165 AATAAGCTTT

                                                
        175 AACCAATAGGTAGTTGGATGAATTGTGGAATAAACC
          1 AACCAATAGGTAGTTGGATGAATTGTGGAATAAACC

                                                
        211 AACCAATAGGTAGTTGGATGAATTGTGGAATAAACC
          1 AACCAATAGGTAGTTGGATGAATTGTGGAATAAACC

             
        247 A
          1 A

        248 TTCACTGAGC


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.40, C:0.11, G:0.25, T:0.25


Consensus pattern (36 bp):   
AACCAATAGGTAGTTGGATGAATTGTGGAATAAACC
Done.