Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00322.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3346
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:342 original size:38 final size:38

Alignment explanation


    Indices: 287--366  Score: 153
    Period size: 38  Copynumber: 2.1  Consensus size: 38

        277 ATATTCACAG

                                                  
        287 AAGT-GGTTTGAAAAGCTTTGCTAGAATTGCCAATGAA
          1 AAGTAGGTTTGAAAAGCTTTGCTAGAATTGCCAATGAA

                                                  
        324 AAGTAGGTTTGAAAAGCTTTGCTAGAATTGCCAATGAA
          1 AAGTAGGTTTGAAAAGCTTTGCTAGAATTGCCAATGAA

                 
        362 AAGTA
          1 AAGTA

        367 TATATTTTCC


Statistics
Matches: 42,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  37    4  0.10
  38   38  0.90

ACGTcount: A:0.38, C:0.10, G:0.24, T:0.29


Consensus pattern (38 bp):   
AAGTAGGTTTGAAAAGCTTTGCTAGAATTGCCAATGAA
Done.