Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00323.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1691
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:1239 original size:15 final size:16

Alignment explanation


    Indices: 1219--1248  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1209 GCCGTTGTTC

                            
       1219 GAAGAGAAA-AAGAGA
          1 GAAGAGAAACAAGAGA

                           
       1234 GAAGAGAAACAAGAG
          1 GAAGAGAAACAAGAG

       1249 CTGAGATTCG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.63, C:0.03, G:0.33, T:0.00


Consensus pattern (16 bp):   
GAAGAGAAACAAGAGA
Done.