Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01507.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2150
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28


Found at i:710 original size:18 final size:19

Alignment explanation


    Indices: 687--723  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        677 GCAGGTGCAT

                       *       
        687 CTGGTGGT-GTTGGAGGGG
          1 CTGGTGGTCGTGGGAGGGG

                               
        705 CTGGTGGTCGTGGGAGGGG
          1 CTGGTGGTCGTGGGAGGGG

        724 TCGAGGTGCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.05, C:0.08, G:0.62, T:0.24


Consensus pattern (19 bp):   
CTGGTGGTCGTGGGAGGGG

Done.