Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00343.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3102
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37


Found at i:881 original size:34 final size:34

Alignment explanation


    Indices: 843--911  Score: 129
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        833 TTTGACTGAG

                       *                      
        843 TTGCTGCTAGAGTATGATTTTGAAACATAAGTTT
          1 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT

                                              
        877 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT
          1 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT

             
        911 T
          1 T

        912 GTTTGGTTGT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42


Consensus pattern (34 bp):   
TTGCTGCTAGAATATGATTTTGAAACATAAGTTT
Done.