Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00343.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3038
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37


Found at i:817 original size:34 final size:34

Alignment explanation


    Indices: 779--847  Score: 129
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        769 TTTGACTGAG

                       *                      
        779 TTGCTGCTAGAGTATGATTTTGAAACATAAGTTT
          1 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT

                                              
        813 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT
          1 TTGCTGCTAGAATATGATTTTGAAACATAAGTTT

             
        847 T
          1 T

        848 GTTTGGTTGT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42


Consensus pattern (34 bp):   
TTGCTGCTAGAATATGATTTTGAAACATAAGTTT
Done.