Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00343.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3761
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34


Found at i:2931 original size:14 final size:16

Alignment explanation


    Indices: 2914--2945  Score: 50
    Period size: 14  Copynumber: 2.1  Consensus size: 16

       2904 AGTTGTTTTG

                            
       2914 TTTTGTTT-TT-TGTT
          1 TTTTGTTTCTTCTGTT

                            
       2928 TTTTGTTTCTTCTGTT
          1 TTTTGTTTCTTCTGTT

              
       2944 TT
          1 TT

       2946 CTTCTTGACA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    8  0.50
  15    2  0.12
  16    6  0.38

ACGTcount: A:0.00, C:0.06, G:0.12, T:0.81


Consensus pattern (16 bp):   
TTTTGTTTCTTCTGTT
Done.