Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00347.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3945
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29


Found at i:596 original size:15 final size:17

Alignment explanation


    Indices: 576--614  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

        566 ACATCATTTG

                             
        576 TTGGATT-TG-TAACTT
          1 TTGGATTCTGATAACTT

                          *  
        591 TTGGATTCTGATAATTT
          1 TTGGATTCTGATAACTT

                   
        608 TTGGATT
          1 TTGGATT

        615 AGGATATTAG


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  15    7  0.33
  16    2  0.10
  17   12  0.57

ACGTcount: A:0.21, C:0.05, G:0.21, T:0.54


Consensus pattern (17 bp):   
TTGGATTCTGATAACTT

Found at i:611 original size:17 final size:15

Alignment explanation


    Indices: 571--614  Score: 52
    Period size: 17  Copynumber: 2.7  Consensus size: 15

        561 TATGAACATC

                            
        571 ATTTGTTGGATTTGTA
          1 ATTT-TTGGATTTGTA

             *               
        587 ACTTTTGGATTCTGATA
          1 ATTTTTGGATT-TG-TA

                       
        604 ATTTTTGGATT
          1 ATTTTTGGATT

        615 AGGATATTAG


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  15    7  0.29
  16    5  0.21
  17   12  0.50

ACGTcount: A:0.20, C:0.05, G:0.20, T:0.55


Consensus pattern (15 bp):   
ATTTTTGGATTTGTA
Done.