Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01508.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3586
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31


Found at i:3161 original size:21 final size:20

Alignment explanation


    Indices: 3137--3182  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 20

       3127 AGGCTAAAAA

                                 
       3137 AATGAGAAGAGAAGTAGCTGC
          1 AATGAGAA-AGAAGTAGCTGC

                        *  *     
       3158 AATGGAGAAAGAGGTTGCTGC
          1 AAT-GAGAAAGAAGTAGCTGC

                
       3179 AATG
          1 AATG

       3183 CGCGTGGAGA


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  20    1  0.05
  21   16  0.73
  22    5  0.23

ACGTcount: A:0.39, C:0.09, G:0.35, T:0.17


Consensus pattern (20 bp):   
AATGAGAAAGAAGTAGCTGC
Done.