Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00372.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2812
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33


Found at i:1561 original size:18 final size:18

Alignment explanation


    Indices: 1538--1577  Score: 80
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1528 ATAAAATCCC

                              
       1538 CTTTTGGAAAATATTTTG
          1 CTTTTGGAAAATATTTTG

                              
       1556 CTTTTGGAAAATATTTTG
          1 CTTTTGGAAAATATTTTG

                
       1574 CTTT
          1 CTTT

       1578 CATTACTAGC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.25, C:0.07, G:0.15, T:0.53


Consensus pattern (18 bp):   
CTTTTGGAAAATATTTTG
Done.