Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00374.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4750
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28


Found at i:4736 original size:16 final size:16

Alignment explanation


    Indices: 4715--4748  Score: 59
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       4705 GCTGAACTGA

                            
       4715 ATATATATATAATTAT
          1 ATATATATATAATTAT

                       *    
       4731 ATATATATATATTTAT
          1 ATATATATATAATTAT

              
       4747 AT
          1 AT

       4749 TT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (16 bp):   
ATATATATATAATTAT
Done.