Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01512.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2346
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25


Found at i:1248 original size:26 final size:26

Alignment explanation


    Indices: 1214--1272  Score: 109
    Period size: 26  Copynumber: 2.3  Consensus size: 26

       1204 TATGGACAGC

                *                     
       1214 CAACGGGAGACGCTGAATATGACGTA
          1 CAACTGGAGACGCTGAATATGACGTA

                                      
       1240 CAACTGGAGACGCTGAATATGACGTA
          1 CAACTGGAGACGCTGAATATGACGTA

                   
       1266 CAACTGG
          1 CAACTGG

       1273 GGCAGTCCAC


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   32  1.00

ACGTcount: A:0.34, C:0.20, G:0.29, T:0.17


Consensus pattern (26 bp):   
CAACTGGAGACGCTGAATATGACGTA
Done.