Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00401.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1157
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:1064 original size:21 final size:21

Alignment explanation


    Indices: 1040--1082  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1030 TGTTACATAT

                   *             
       1040 GATATTAGTAGTGCAGACTTA
          1 GATATTAATAGTGCAGACTTA

                                 
       1061 GATATTAATAGTGCAGACTTA
          1 GATATTAATAGTGCAGACTTA

             
       1082 G
          1 G

       1083 TTGTCCAAAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33


Consensus pattern (21 bp):   
GATATTAATAGTGCAGACTTA
Done.