Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00411.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2304
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:360 original size:9 final size:9

Alignment explanation


    Indices: 327--362  Score: 54
    Period size: 9  Copynumber: 3.9  Consensus size: 9

        317 TTAAAACGCA

                      
        327 TTCTTTCTTC
          1 TTCTTT-TTC

                 *   
        337 TTCTTCTTC
          1 TTCTTTTTC

                     
        346 TTCTTTTTC
          1 TTCTTTTTC

                    
        355 TTCTTTTT
          1 TTCTTTTT

        363 TTTTTTTTTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
   9   19  0.79
  10    5  0.21

ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75


Consensus pattern (9 bp):   
TTCTTTTTC

Found at i:365 original size:12 final size:12

Alignment explanation


    Indices: 331--364  Score: 52
    Period size: 12  Copynumber: 2.9  Consensus size: 12

        321 AACGCATTCT

                    *   
        331 TTCTTCTTCTTC
          1 TTCTTCTTTTTC

                        
        343 TTCTTCTTTTTC
          1 TTCTTCTTTTTC

                       
        355 TTCTT-TTTTT
          1 TTCTTCTTTTT

        365 TTTTTTTTCC


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  11    5  0.24
  12   16  0.76

ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76


Consensus pattern (12 bp):   
TTCTTCTTTTTC
Done.