Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00419.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3227
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34


Found at i:2019 original size:53 final size:53

Alignment explanation


    Indices: 1956--2058  Score: 179
    Period size: 53  Copynumber: 1.9  Consensus size: 53

       1946 AGAATACTTC

                                        *               *        
       1956 GGGGTGGTAGATATGAGAATACTTAATTTCAATAGGAAGCTCGGTTGGATATT
          1 GGGGTGGTAGATATGAGAATACTTAATTCCAATAGGAAGCTCGGCTGGATATT

                                     *                        
       2009 GGGGTGGTAGATATGAGAATACTTAGTTCCAATAGGAAGCTCGGCTGGAT
          1 GGGGTGGTAGATATGAGAATACTTAATTCCAATAGGAAGCTCGGCTGGAT

       2059 TAGGCATAGA


Statistics
Matches: 47,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  53   47  1.00

ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29


Consensus pattern (53 bp):   
GGGGTGGTAGATATGAGAATACTTAATTCCAATAGGAAGCTCGGCTGGATATT
Done.