Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00448.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 446

Length: 744
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34


Found at i:392 original size:22 final size:22

Alignment explanation


    Indices: 361--402  Score: 59
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        351 TTTGATGATC

                                   
        361 ACAACAGTGAT-AGTGAGAAGCG
          1 ACAACAGTGATAAG-GAGAAGCG

                 *              
        383 ACAACTGTGATAAGGAGAAG
          1 ACAACAGTGATAAGGAGAAG

        403 AAAGGAGAAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  22   16  0.89
  23    2  0.11

ACGTcount: A:0.43, C:0.12, G:0.31, T:0.14


Consensus pattern (22 bp):   
ACAACAGTGATAAGGAGAAGCG

Found at i:588 original size:21 final size:22

Alignment explanation


    Indices: 557--599  Score: 63
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        547 TAGAAGGGAG

                                   
        557 AAGATAAAAAA-AATAAGAAAAA
          1 AAGATAAAAAAGAA-AAGAAAAA

                                  
        579 AAGA-AAAAAAGAAAAGAAAAA
          1 AAGATAAAAAAGAAAAGAAAAA

        600 GGAAATGGGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  21   14  0.70
  22    6  0.30

ACGTcount: A:0.84, C:0.00, G:0.12, T:0.05


Consensus pattern (22 bp):   
AAGATAAAAAAGAAAAGAAAAA

Done.