Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g00462.C1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4747
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Found at i:2822 original size:188 final size:188
Alignment explanation
Indices: 2495--2844 Score: 477
Period size: 188 Copynumber: 1.9 Consensus size: 188
2485 CATTTCCTGC
* * * *
2495 CTTCATGTGGGATTTTTGCATAAATTAGGTTAATTGCCTCTTTATGCTGCCTGGACTTGTAGCTT
1 CTTCATGTGGGACTTTTGCATAAATTAGGTTAATTGCCTCTGTATGCTGCCTAGACTTCTAGCTT
* ** * ** * *
2560 TTTTCCTTACTTTGAGATGCTGCTTGTTTGCACCGGTACTTACGCTTGGGTTGCTAAATTTATAA
66 TTTTCCTTACTTTGAGATGCTGCCTGCATGCACCGGTACTTAAGCCCGAGTTACTAAATTTATAA
*
2625 CTGAAATGTAGTTTGTGGGAGTTCCTTGAACCCAAGATAGCAACACTGGTATTTCTAT
131 CTGAAATGTAGTTTGTGGGAGTTCCTTAAACCCAAGATAGCAACACTGGTATTTCTAT
* *
2683 CTTCATGTGGTACTTTTGCATAAATTAGGTTAATTGCCTCTGTATGCTG-TTCAGACTTCTAGCT
1 CTTCATGTGGGACTTTTGCATAAATTAGGTTAATTGCCTCTGTATGCTGCCT-AGACTTCTAGCT
* * ** * *
2747 TTTTTCTTTACTTTGAGATGCTTCCTGCATGCATTGGTGCTTAAGCCCGAGTTACTAAATTTCTA
65 TTTTTCCTTACTTTGAGATGCTGCCTGCATGCACCGGTACTTAAGCCCGAGTTACTAAATTTATA
* *
2812 ACTTAAATGTAGTTTGTGGGCGTTCCTTAAACC
130 ACTGAAATGTAGTTTGTGGGAGTTCCTTAAACC
2845 TTCTTCATTT
Statistics
Matches: 138, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
187 1 0.01
188 137 0.99
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (188 bp):
CTTCATGTGGGACTTTTGCATAAATTAGGTTAATTGCCTCTGTATGCTGCCTAGACTTCTAGCTT
TTTTCCTTACTTTGAGATGCTGCCTGCATGCACCGGTACTTAAGCCCGAGTTACTAAATTTATAA
CTGAAATGTAGTTTGTGGGAGTTCCTTAAACCCAAGATAGCAACACTGGTATTTCTAT
Done.