Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00466.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3241
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.26


Found at i:2001 original size:63 final size:63

Alignment explanation


    Indices: 1897--2137  Score: 428
    Period size: 63  Copynumber: 3.8  Consensus size: 63

       1887 ATAATAGAAA

                *         *                                                
       1897 GAGACAAAGGAACCTTATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATTAAT
          1 GAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATTAAT

                                                                           
       1960 GAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATTAAT
          1 GAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATTAAT

                                                                          *
       2023 GAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATTAAA
          1 GAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATTAAT

                            *                      *    *       
       2086 GAGAGAAAGGAACCATCTGCACAGTAAGAGGTCATCAAATAAACGAGAAGGT
          1 GAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGT

       2138 ACCTCACAAG


Statistics
Matches: 172,  Mismatches: 6, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  63  172  1.00

ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18


Consensus pattern (63 bp):   
GAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATTAAT

Found at i:2929 original size:2 final size:2

Alignment explanation


    Indices: 2922--2950  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       2912 TAGGTTTCTT

                                                       
       2922 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

       2951 TTTTATATTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.