Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00466.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2798
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25


Found at i:2001 original size:63 final size:63

Alignment explanation


    Indices: 1894--2074  Score: 308
    Period size: 63  Copynumber: 2.9  Consensus size: 63

       1884 GGAATAATAG

                   *         *                                             
       1894 AAAGAGACAAAGGAACCTTATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT
          1 AAAGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT

              *                                                            
       1957 AATGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT
          1 AAAGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT

                               *                      *    *       
       2020 AAAGAGAGAAAGGAACCATCTGCACAGTAAGAGGTCATCAAATAAACGAGAAGGT
          1 AAAGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGT

       2075 ACCTCACAAG


Statistics
Matches: 111,  Mismatches: 7, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  63  111  1.00

ACGTcount: A:0.44, C:0.16, G:0.23, T:0.17


Consensus pattern (63 bp):   
AAAGAGAGAAAGGAACCATATGCACAGTAAGAGGTCATCAAACAAACCAGAAGGTTCTGTATT
Done.