Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00470.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27


Found at i:40 original size:17 final size:17

Alignment explanation


    Indices: 18--53  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

          8 CCAGAGTATT

                             
         18 TTCTTCTAGTTTTCGCC
          1 TTCTTCTAGTTTTCGCC

                             
         35 TTCTTCTAGTTTTCGCC
          1 TTCTTCTAGTTTTCGCC

              
         52 TT
          1 TT

         54 TCACTGTTTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.06, C:0.28, G:0.11, T:0.56


Consensus pattern (17 bp):   
TTCTTCTAGTTTTCGCC
Done.