Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00493.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3289
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29


Found at i:163 original size:9 final size:11

Alignment explanation


    Indices: 123--156  Score: 50
    Period size: 11  Copynumber: 3.0  Consensus size: 11

        113 TCTGCACCAC

                   *   
        123 CTCCTCTGCCT
          1 CTCCTCTCCCT

                        
        134 CTCCCTCTCCCT
          1 CT-CCTCTCCCT

                       
        146 CTCCTCTCCCT
          1 CTCCTCTCCCT

        157 TCTCTCCTTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  11   11  0.52
  12   10  0.48

ACGTcount: A:0.00, C:0.62, G:0.03, T:0.35


Consensus pattern (11 bp):   
CTCCTCTCCCT
Done.