Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00518.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 984

Length: 1641
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34


Found at i:676 original size:33 final size:33

Alignment explanation


    Indices: 634--703  Score: 115
    Period size: 33  Copynumber: 2.2  Consensus size: 33

        624 AAGAGATGGG

                                             
        634 TCAATTTTTGAAGAGAGCTTCATCCGTAGTTCC
          1 TCAATTTTTGAAGAGAGCTTCATCCGTAGTTCC

                             *         *     
        667 TCAATTTTTGAAGAGAGTTTCATCCGTGGTTCC
          1 TCAATTTTTGAAGAGAGCTTCATCCGTAGTTCC

                 
        700 -CAAT
          1 TCAAT

        704 CTCCATGTTG


Statistics
Matches: 35,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  32    4  0.11
  33   31  0.89

ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37


Consensus pattern (33 bp):   
TCAATTTTTGAAGAGAGCTTCATCCGTAGTTCC
Done.