Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00533.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 365

Length: 609
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36


Found at i:70 original size:3 final size:3

Alignment explanation


    Indices: 56--92  Score: 65
    Period size: 3  Copynumber: 12.0  Consensus size: 3

         46 AAGAATGTGG

                                                            
         56 AGA AGCA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
          1 AGA AG-A AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA

         93 GCTTTAGTAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   3   30  0.91
   4    3  0.09

ACGTcount: A:0.65, C:0.03, G:0.32, T:0.00


Consensus pattern (3 bp):   
AGA

Done.