Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00535.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 893

Length: 1489
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30


Found at i:1405 original size:38 final size:38

Alignment explanation


    Indices: 1363--1443  Score: 153
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       1353 TTTGTGAAAT

                                                  
       1363 TAGTGATACATACGCATGAATAATGTAACTCTTGGTTG
          1 TAGTGATACATACGCATGAATAATGTAACTCTTGGTTG

                        *                         
       1401 TAGTGATACATAGGCATGAATAATGTAACTCTTGGTTG
          1 TAGTGATACATACGCATGAATAATGTAACTCTTGGTTG

                 
       1439 TAGTG
          1 TAGTG

       1444 TAAAGTTGTT


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  38   42  1.00

ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35


Consensus pattern (38 bp):   
TAGTGATACATACGCATGAATAATGTAACTCTTGGTTG
Done.