Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00537.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36


Found at i:937 original size:16 final size:16

Alignment explanation


    Indices: 917--971  Score: 85
    Period size: 16  Copynumber: 3.4  Consensus size: 16

        907 GTTTGGTTTA

                            
        917 CTGTAATGGAATA-AG
          1 CTGTAATGGAATAGAG

                             
        932 ACTGTAATGGAATAGAG
          1 -CTGTAATGGAATAGAG

            *               
        949 TTGTAATGGAATAGAG
          1 CTGTAATGGAATAGAG

                   
        965 CTGTAAT
          1 CTGTAAT

        972 CAGTAATTCA


Statistics
Matches: 36,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
  16   34  0.94
  17    2  0.06

ACGTcount: A:0.38, C:0.05, G:0.27, T:0.29


Consensus pattern (16 bp):   
CTGTAATGGAATAGAG
Done.