Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00541.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4017
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:633 original size:6 final size:6

Alignment explanation


    Indices: 618--652  Score: 61
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        608 TCAAAGTAAT

                        *                           
        618 GCATCG GCATCA GCATCG GCATCG GCATCG GCATC
          1 GCATCG GCATCG GCATCG GCATCG GCATCG GCATC

        653 ATCCCGCTTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17


Consensus pattern (6 bp):   
GCATCG

Done.