Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00543.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 779

Length: 1299
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29


Found at i:87 original size:22 final size:22

Alignment explanation


    Indices: 46--87  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

         36 CGGCTGGCGA

                        *         
         46 AGGAATTCATCGGAGAAATTGG
          1 AGGAATTCATCGAAGAAATTGG

                           *    
         68 AGGAATTCATCGAAGTAATT
          1 AGGAATTCATCGAAGAAATT

         88 CAGTTCAAAC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26


Consensus pattern (22 bp):   
AGGAATTCATCGAAGAAATTGG
Done.